This started on glassfish-4.0-b59 and b58, did not have this issue on glassfish-4.0-b57.
after running asadmin enable-secure-admin, and re-cycling glassfish
you cannot stop/start glassfish anymore.
error from the command line is this:
CLI306: Warning - The server located at Z:\glassfish3\glassfish\domains\domain
is not running.
Command stop-domain executed successfully.
When the process is checked glassfish is running.
Also, this was confirmed multiple times on b58 and 59 with same results.
The server.log is attached.